Dernière mise à jour: 7 avril 2018.
Revues internationales - International Journals:
Robin Milosz and Sylvie Hamel, Exploring the Median of Permutations Problem,
Journal of Applied Mathematics, submitted mars 2018.
Robin Milosz and Sylvie Hamel, Space reduction constraints for the median of permutations problem,
Journal of Discrete Applied Mathematics, accepted mars 2018.
Bryan Brancotte, Bo Yang, Guillaume Blin, Sarah Cohen-Boulakia, Alain Denise and Sylvie Hamel, Rank aggregation with ties: Experiments and Analysis, Very Large Data Bases Endowment,
Vol 8, no. 11, pp. 1202-1213, 2015.
Fehmi Jaafar, Yann-Gaël Guéhéneuc, Sylvie Hamel, Foutse Khomh and Mohammad Zulkernine, Evaluating the impact of design pattern and anti-pattern dependencies on changes and
faultsEvaluating the impact of design pattern and anti-pattern dependencies on changes and faults, Empirical Software Engineering, pp.1--36, 2015.
Marc-Frédérick Blanchet, Karine St-Onge, Véronique Lisi, Julie Robitaille, Sylvie Hamel and François Major,
Computational identification of RNA functional determinants by three-dimentional quantitative
structure-activity relationships, NAR (Nucleic Acid Research), early publication, doi:10.1093/nar/gku816, 21 pages + 16 pages (additional materials), September 2014.
Fehmi Jaafar ,
Yann-Gaël Guéhéneuc, Sylvie Hamel and Giuliano Antoniol , Detecting
Asynchrony and Dephase Change Patterns by Mining Software Repositories , Journal of Software: Evolution and Process, Vol 26, Issue 1, pp. 77-106, 2014.
Fehmi Jaafar ,
Yann-Gaël Guéhéneuc, Sylvie Hamel and Foutse Khomh , Analysing
Anti-patterns Static Relationships with Design Patterns , accepté à Electronic Communications of the EASST
(European Association of Software Science and Technology), novembre 2013.
Jean-Philippe Doyon ,
Cedric Chauve and Sylvie Hamel, An efficient method for exploring the space of
gene tree/species tree reconciliations in a probabilistic framework, IEEE/ACM
Transactions on Computational Biology and Bioinformatics, Vol.9, No. 1, pp. 26--39, 2012.
Aida Ouangraoua , Valentin Guignon,
Cedric Chauve and Sylvie Hamel , A new algorithm for aligning
nested arc-annotated sequences under arbitrary weight schemes, Theoretical Computer Science, Volume 412, Issues 8-10, pp. 753-764, 2011.
Guillaume Blin ,
Maxime Crochemore , Sylvie Hamel
and Stéphane Vialette , Medians of an odd number of
permutations, Pure Mathematics and Applications, Volume 21, Issue 2, pp. 161-175, 2010.
Olivier Kaczor, Yann-Gaël Guéhéneuc and Sylvie Hamel,
Identification of design motifs with pattern matching algorithms, Information Software Technology, 52(2), pp.152-168, 2009.
Jean-Philippe Doyon ,
Cedric Chauve and Sylvie Hamel, Space of Gene/Species Trees Reconciliations
and Parsimonious Models , Journal of Computational Biology, 16 (10), pp. 1399-1418, 2009.
Karine St-Onge, Philippe Thibault, Sylvie Hamel and
François Major, Modeling and Aligning
the Sarcin-Ricin Motif by Graph-Grammars, Nucleic Acid Research, Vol. 35, No. 5, pp.1726-1736, 2007.
Srecko Brlek, Sylvie Hamel, Maurice Nivat,
Christophe Reutenauer, On the Palindromic Complexity of Infinite Words,
International Journal of Foundations of Computer Science, 15-2, pp.293-306, 2004.
Anne Bergeron and
Sylvie Hamel, From Cascade Decompositions to Bit-Vector
Algorithms, Theoretical Computer Science, 313, pp. 3-16, 2004.
(Version alongée de l'article "Cascade Decomposition are Bit-Vector Algorithms",
présenté à CIAA01.)
Anne Bergeron and
Sylvie Hamel, Vector Algorithms for Approximate String
Matching, International Journal of Foundations of Computer Science, 13-1,
pp. 53-66, 2002.
François Bergeron and
Sylvie Hamel, Intersections of modules related to Macdonald's
polynomials, Discrete Mathematics, 217, pp.51-64, 2000.
Conférences internationales - International Conferences:
Robin Milosz, Sylvie Hamel et Adeline Pierrot,
Median of 3 Permutations, 3-Cycles and 3-Hitting Set Problem, submitted to
International Workshop on Combinatorial Algorithms (IWOCA), mars 2018.
Alexandre Blondin-Massé, Marie Gasparoux, Sylvie Hamel and Élise Vandomme,
Nearest constrained circular binary words, accepted to Combinatorial Pattern Matching, mars 2018.
Charles Desharnais and Sylvie Hamel, Automedians sets of permutation: extended abstract ,
in the proceedings of PP2017 (15th International Conference on Permutation Patterns 2017), 5 pages, 2017.
Robin Milosz and Sylvie Hamel, Heuristics, Branch-and-Bound Solver and Improved Space Reduction for the Median of Permutations Problem, accepted to IWOCA 2017
(28th International Workshop on Combinatorial Algorithms), May 2017.
Robin Milosz and Sylvie Hamel, Medians of permutations : building constraints, LNCS 9602, CALDAM 2016 (Second International Conference on Algorithms and Discrete Applied Mathematics,
pp. 264--276, 2016. (Prix du meilleur article)
Sylvie Hamel and Robin Milosz, Medians of permutations: when A=M(A), proceedings of the {\bf 12th Permutation Pattern conference}, 4 pages, 2014.
Fehmi Jaafar ,
Yann-Gaël Guéhéneuc, Sylvie Hamel et Foutse Khomh , Mining the
Relationship Betwwen Anti-Patterns Dependencies and Fault-proneness , WCRE2013 (20th Working Conference on Reverse Engineering), pp. 351-360, 2013.
Fehmi Jaafar ,
Yann-Gaël Guéhéneuc et Sylvie Hamel, Analysing Anti-patterns Static Relationships with Design Patterns
, PPAP 2013 (First Workshop on Patterns Promotion and Anti-patterns Prevention), 6 pages, 2013.
Fehmi Jaafar ,
Salima Hassaine, Yann-Gaël Guéhéneuc, Sylvie
Hamel et Bram Adams , On the Relationship Between Program Evolution and Fault-proneness: An
Empirical Study , CSMR 2013 (17th European Conference on Software Maintenance and Reengineering), pp. 15--24, 2013.
Xiao Yang, Florian Sikora , Guillaume
Blin , Sylvie Hamel, Romeo Rizzi et
Srinivas Aluru , An Algorithmic View on Multi-related-segments: a unifying model for approximate
common interval , TAMC 2012 (9th annual conference on Theroy and Applications of Models of Computation), pp. 319--329, 2012.
Salima Hassaine,
Yann-Gaël Guéhéneuc, Sylvie Hamel et Giuliano Antoniol , ADvISE:
Architectural Decay In Software Evolution , CSMR 2012 (16th European Conference on Software Maintenance and Reengineering), pp. 267--276, 2012
Jérôme Azé, Thomas Bourquard, Sylvie Hamel,
Anne Poupon et Dave W. Ritchie, Using Kendall-tau meta-
bagging to improve Protein-Protein Docking predictions, Lecture Notes in Bioinformatics 7036, PRIB 2011 (6th IAPR International Conference on Pattern Recognition in Bioinformatics),
pp. 284-295, 2011.
Fehmi Jaafar,
Yann-Gaël Guéhéneuc, Sylvie Hamel et Giuliano Antoniol,
An Exploratory Study of Macro Co-changes, Proceedings of the 18th Working Conference on Reverse Engineering (WCRE), IEEE Computer Society Press, pp. 325-334, 2011.
Salima Hassaine, Ferdaous Boughanmi,
Yann-Gaël Guéhéneuc, Sylvie Hamel et
Giuliano Antoniol, A seismology-inspired approach to study change propagation , Proceedings of the 27th IEEE International
Conference on Software Maintenance (ICSM), IEEE Computer Society Press, pp. 53-62, 2011.
Salima Hassaine, Ferdaous Boughanmi,
Yann-Gaël Guéhéneuc, Sylvie Hamel et
Giuliano Antoniol, Change Impact Analysis: an Earthquake Metaphor, Proceedings of the 19th IEEE Internationale Conference on Program
Comprehension, IEEE Computer Society Press, pp. 209-210, 2011. (Poster)
Sarah Cohen-Boulakia, Alain Denise et Sylvie Hamel, Using Medians to generate consensus
rankings for biological data, Lecture Notes in Computer Science 4580, SSDBM 2011 (23rd Scientific and Statistical Database Management Conference), pp. 73-90, 2011.
Salima Hassaine,
Foutse Khomh , Yann-Gaël Guéhéneuc et Sylvie Hamel,
IDS: An Immunology-inspired Approach for the Detection of Software Design Smells, QUATIC 2010 (Seventh International Conference on Quality of Information and
Communications Technology), pp.343-348, 2010.
Guillaume Blin , Sylvie Hamel
et Stéphane Vialette , Comparing RNA structures with biologically rel-
evant operations cannot be done without strong combinatorial restrictions, Lecture Notes in Computer Science 5942, WALCOM2010 (Workshop on Algorithms and
Computations), pp.149-160, 2010.
Guillaume Blin ,
Maxime Crochemore , Sylvie Hamel
et
Stéphane Vialette , Finding the median of three permutations under the Kendall-tau distance , proceedings of the 7th Permutation
Pattern conference, pp. 31-36, 2009.
Jean-Philippe Doyon ,
Cedric Chauve et Sylvie Hamel, Algorithms for exploring the space of gene
tree/species tree reconciliations , Lecture Notes in Bioinformatics 5267, RECOMBCG
2008 Recomb Comparative Genomics 2008), pp.1-13, 2008.
Maxime Benoît-Gagné et Sylvie Hamel, A new and fast way to sort a permutation
by transpositions , Lecture Notes in Computer Science 4580 (Combinatorial Pattern Matching), pp. 131-141, 2007.
Olivier Kaczor,
Yann-Gaël Guéhéneuc et Sylvie Hamel, Efficient Identification of
Design Patterns with Bit-Vector Algorithms, proceedings of the 10th European Conference on Software Maintenance and
Reengineering, IEEE Computer Society Press, pp.173--182, 2006.
Sylvie Hamel, A study of some easily parallellizable automata , Proceedings de JCIS 2006
pp. 779-783, 2006.
Valentin Guignon,
Cedric Chauve et Sylvie Hamel, An
edit distance between RNA stem-loops , Lecture Notes in Computer Science 3772 (String Processing
and Information REtrival), pp. 335-347, 2005.
Cedric Chauve ,
Valentin Guignon et Sylvie Hamel,
Distance d'édition entre "tige-boucles", Proceedings de JOBIM 2005 (Journées
Ouvertes en Biologie Informatique et Mathématiques), 3 pages, 2005.
Sylvie Hamel, Finding global similarities between proteins
using vector algorithms , Proceedings de JCIS 2005 (Joint Conference on Information Science),
pp. 1221-1225, 2005.
Anne Bergeron et
Sylvie Hamel, Cascade Decompositions are Bit-Vector Algorithms
, Lecture Notes in Computer Science 2494 (International Conference on Implementation
and Application of Automata), pp.13-26, 2002.
Anne Bergeron et
Sylvie Hamel, Fast Implementations of Automata Computations,
Lecture Note in Computer Science 2088 (International Conference on Implementation
and Application of Automata), pp.47-56, 2001.
Rapports Internes:
Salima Hassaine,
Yann-Gaël Guéhéneuc et Sylvie Hamel, Évolution Biologique et
Applications en Génie Logiciel, rapport interne EPMRT2010-03, Département de génie informatique et génie logiciel, École polytechnique
de Montréal, 2010.
Jean-Philippe Doyon , Sylvie Hamel et
Cedric Chauve , An efficient method for exploring the space of gene tree/species tree reconciliations in a probabilistic framework, rapport interne
RR-10002 (2010) 19, LIRMM, 2010.
Jean-Philippe Doyon ,
Cedric Chauve et Sylvie Hamel, Algorithms for exploring the space of gene
tree/species tree reconciliations , rapport interne 1323, DIRO, 2008.
Guillaume Blin ,
Sylvie Hamel et Stéphane Vialette , Comparing RNA structures using a full set of
biologically relevant edit operations is intractable , CoRR abs/0812.3946, 2008.
Aida Ouangraoua , Valentin Guignon,
Cedric Chauve et Sylvie Hamel ,
New algorithms for align-ing nested arc-annotated sequences , rapport interne RR-1443-08, Labri (Laboratoire
Bordelais de Recherche en Informatique), avril 2008.